2024

Schreiber M, Jayakodi M, Stein N, Mascher M (2024). Plant pangenomes: current and future applications in crop improvement and evolutionary research. Nature Reviews Genetics https://doi.org/10.1038/s41576-024-00691-4.

Thirulogachandar V, Govind G, Hensel G, Kale SM, Kuhlmann M, Eschen-Lippold L, Rutten T, Koppolu R, Rajaraman J, Palakolanu SR, Seiler C, Sakuma S, Jayakodi M, Lee J, Kumlehn J, Komatsuda T, Schnurbusch T, Sreenivasulu N (2024). HOMEOBOX2, the paralog of SIX-ROWED SPIKE1/HOMEOBOX1, is dispensable for barley spikelet development. Journal of Experimental Botany erae044.

Huang Y, Maurer A, Giehl RFH, Zhao S, Golan G, Thirulogachandar V, Li G, Zhao Y, Trautewig C, Himmelbach A, Börner A, Jayakodi M, Stein N, Mascher M, Pillen K, Schnurbusch T (2024). Dynamic phytomeric growth contributes to local adaptation in barley. Molecular Biology and Evolution msae011.

Van Binh N, Kim MJ, Giang VNL, Lee YS, Jayakodi M, Park HS, Mohanan P, Kang KB, Ryu B, Park EJ, Park TK, Yang TJ (2024). Improved biomass and metabolite production in hairy root culture in various genotypes of Panax ginseng through genetic transformation. Plant Cell, Tissue and Organ Culture 156, 43.

2023

Jayakodi M, Golicz AA, Kreplak J, Lavinia I. Fechete LI, Angra D,Bednář P,Bornhofen E,Zhang H,Boussageon R,Sukhjiwan K,Cheung K,Čížková J,Gundlach H, Hallab A, Imbert B, Keeble-Gagnère G, Koblížková A, Kobrlová L, Krejčí P, Mouritzen TW, Neumann P, Nadzieja M, Nielsen LK, Novák P,Orabi J, Padmarasu S, Robertson-Shersby-Harvie T, Robledillo LA, Schiemann A, Tanskanen J, Törönen P, Warsame AO, Wittenberg AHJ, Himmelbach A,Aubert G, Courty PE, Doleže J, Holm LU, Janss LL,Khazaei H, Macas J, Mascher M,Smýkal P, Snowdon RJ, Nils Stein N, Stoddard FL, Tayeh N, Torres AM, Björn Usadel B, Schubert I, O’Sullivan DM, Schulman AH, Andersen SU (2023).The giant diploid faba genome unlocks variation in a global protein crop. Nature 615:652–659.

2022

Zhang H, Mascher M, Abbo S, Jayakodi M (2022). Advancing grain legumes domestication and evolution studies with genomics. Plant and Cell Physiology 10:pcac062.

Wang Y, Habekuß A, Jayakodi M, Mascher M,  Snowdon RJ, Stahl A, Fuß J, Ordon F, Perovic D (2022). High-resolution mapping of Barley mild mosaic virus resistance gene rym15. Frontiers in Plant Science 13:908170.

Yu G, Matny O, Champouret N, Steuernagel B, Moscou M J, Hernández-Pinzón I, Green P, Hayta S, Smedley M, Harwood W, Kangara N, Yue Y, Gardener C, Banfield M J, Olivera P D, Welchin C, Simmons J, Millet E, Minz-Dub A, Ronen M, Avni R, Sharon A, Patpour M, Justesen A F, Jayakodi M, Himmelbach A, Stein N, Wu S, Poland J, Ens J, Pozniak C, Karafiátová M, Molnár I, Doležel J, Ward E R, Reuber T L, Jones J D G, Mascher M, Steffenson B J, Wulff BBH (2022). Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62. Nature Communications 13, 1607.

Manickam S, Adhimoolam J, Balasubramaniam M, Rajagopalan V, Mayalagu K, Manickam D, Jayakodi M, Madiha NS, Karuppiah EAA, Muthaiyan P, Natesan S, Muthurajan R (2022). Dynamic Transcriptome Profiling of Mungbean Genotypes Unveil the Genes Respond to the Infection of Mungbean Yellow Mosaic Virus. Pathogens  11:190.

Kamal N, Lux T, Jayakodi M, Haberer G, Gundlach H, Mayer KFX, Mascher M, Spannagl M (2022). The Barley and Wheat Pan-Genomes. Plant Bioinformatics. Methods in Molecular Biology, vol 2443. Humana, New York, NY.

2021

Mascher M Jayakodi M, Stein N (2021). The reinvention of potato. Cell Research 0:1-2

Jayakodi M, Schreiber M, Stein N, Mascher M (2021). Building pan-genome infrastructures for crop plants and their use in association genetics. DNA Research 28: dsaa030

2020

Jayakodi M, Padmarasu S, Haberer G, Bonthala VS, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang XQ, Angessa TT, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston LB, Plott C, Jenkins J, Guo Y, Fiebig A, Budak H, Xu D, Zhang J, Wang C, Grimwood J, Schmutz J, Guo G, Zhang G, Mochida K, Hirayama T, Sato K, Chalmers KJ, Langridge P, Waugh R, Pozniak CJ, Scholz U, Mayer KFX, Spannagl M, Li C, Mascher M, Stein N (2020). The barley pan-genome reveals the hidden legacy of mutation breeding. Nature 588:284–289.

Park HS, Jayakodi M, Lee SH, Jeon JH, Lee HO, Park JY, Moon BC, Kim CK, Wing RW, Newmaste S, Kim JY, Yang TJ (2020). Mitochondrial plastid DNA can cause DNA barcoding paradox in plants. Scientific Reports 10:6112.

2019

Jayakodi M, Schreiber M, Mascher M (2019). Sweet genes in melon and watermelon. Nature Genetics 51:1572-1573.

Muqaddasi QM, Jayakodi M, Börner A, Röder MS (2019). Identification of consistent QTL with large effect on anther extrusion in doubled haploid populations developed from spring wheat accessions in German Federal ex situ Genebank. Theoretical and Applied Genetics 132:3035-3045.

Mayalagu KM, Jayakodi M, Adhimoolam K, Woojong J, Manickam D, Nallathambi J, Manickam S, Vanniarajan GK, Yang TJ, Muthurajan R, Muthaiyan P, Natesan S (2019). Detection of QTLs associated with mungbean yellow mosaic virus (MYMV) resistance using the interspecific cross of Vigna radiata× Vigna umbellata. Journal of Applied Genetics 60:255-268.

Irulappan M, Devina S, Santhi MS, Adhimoolam K, Manickam D, Jayakodi M, John SK, Devarajan M, Yang TJ, Muthaiyan P, Natesan S (2019). QTL mapping in Vigna radiata× Vigna umbellatapopulation uncovers major genomic regions associated with bruchid resistance. Molecular Breeding 39: 110.

Jayakodi M, Madheswaran M, Adhimoolam K, Perumal S, Manickam D, Kandasamy T, Yang TJ, Natesan S (2019). Transcriptomes of Indian barnyard millet and barnyardgrass reveal putative genes involved in drought adaptation and micronutrient accumulation. Acta Physiologiae Plantarum 41:66.

2018

Madheswaran M, Manickam D, Adhimoolam K, Jayakodi M, Renganathan VG, Velllaikumar S, Vanniarajan C, Natesan S (2018). Genetic diversity in the barnyard millet (Echinochola frumentacea) germplasms revealed by morphological traits and simple sequence repeat markers. Current Plant Biology 14:71-78.

Kang KB^*, Jayakodi M^*, Lee YS^*, Nguyen VB, Park HS, Koo HJ, Choi IY, Kim DH, Chung YJ, Ryu B, Lee DY, Sung SH, Yang TJ (2018). Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng. Scientific Reports 8:11744.

Jayakodi M, Lee SC, Yang TJ (2018). Comparative transcriptome analysis of heat stress responsiveness in two contrasting ginseng cultivars. Journal of Ginseng Research 43:572-579.

Waminal NE, Pellerin RJ, Kim NS, Jayakodi M, Park JY, Yang TJ & Kim HH (2018). Rapid and Efficient FISH using Pre-Labeled Oligomer Probes. Scientific Reports  8:8224.

Kim CK, Seol YJ, Perumal S, Lee J, Waminal NE, Jayakodi M, Lee SC, Jin S, Choi BS, Yu Y, Ko HC, Choi JW, Ryu KY, Sohn SH, Parkin I, Yang TJ (2018). Re-exploration of U’s Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences. Scientific Reports 8:7353.

Kim NH^*, Jayakodi M^*, Lee SC, Choi BS, Jang WJ, Lee J, Kim HH, Waminal NE, Lakshmanan M, Nguyen VB, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, Joh HJ, Lee H, Kim JK, Kim IS, Kim KH, Koduru L, Kang KB, Sung SH, Yu Y, Park D, Choi D, Seo E, Kim SI, Kim YC, Hyun DY, Park YI, Kim C, Lee TH, Kim HU, Soh MS, Lee Y, In JG, Kim HS, Kim YM, Yang DC, Wing RW, Lee DY, Paterson AH, Yang TJ (2018). Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal  16(11):1904-1917.

Jayakodi M, Choi BS, Lee SC, Kim NH, Park JY, Jang WJ, Lakshmanan M, Mohan VS, Lee DY, Yang TJ (2018). Ginseng Genome Database: An open-access platform for genomics of Panax ginseng. BMC Plant Biology 18(1):62.

2017

Lee YS, Park HS, Lee DK, Jayakodi M, Kim NH, Lee SC, Kundu A, Lee DY, Chang Kim Y, In JG, Kwon SW, Yang TJ (2017). Comparative analysis of the transcriptomes and primary metabolite profiles of adventitious roots of five ginseng cultivars. Journal of Ginseng Research 41 (1), 60-68.

Lee YS, Park HS, Lee DK, Jayakodi M, Kim NH, Koo HJ, Lee SC, Kim YJ, Kwon SW, Yang TJ (2017). Integrated transcriptomic and metabolomic analysis of five Panax ginsengcultivars reveals the dynamics of ginsenoside biosynthesis. Frontiers in Plant Science 8:1048.

2015

Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, Lee HJ, Park JY, Perumal S, Jayakodi M, Lee YS, Kim B, Copetti D, Kim S, Kim S, Lim KB, Kim YD, Lee J, Cho KS, Park BS, Wing RA, Yang TJ (2015). Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports 5:15655.

Jayakodi M, Jung JW, Park D, Ahn YJ, Lee SC, Shin SY, Shin CS, Yang TJ and Kwon HW (2015). Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honeybees Apis ceranaand Apis mellifera. BMC Genomics 16:680.

Jayakodi M, Lee SC, Lee YS, Park HS, Kim NH, Jang W, Lee HO, Joh HJ, Yang TJ (2015). Comprehensive analysis of Panax ginsengroot transcriptomes. BMC Plant Biology 15:138.

Lee J, Izzah N, Jayakodi M, Perumal S, Joh H, Lee H, Lee SC, Park J, Yang KW, Nou IS, Seo J, Yoo J, Suh Y, Ahn K, Lee J, Choi G, Yu Y, Kim H, Yang TJ (2015). Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. BMC Plant Biology 15(1):32.

Senthil K, Jayakodi M, Thirugnanasambantham P, Lee S, Duraisamy P, Purushotham PM, Rajasekaran K, Nancy Charles S, Mariam Roy I, Nagappan A, Kim G, Lee Y, Natesan S, Min TS, Yang TJ (2015). Transcriptome analysis reveals in vitro cultured Withania somniferaleaf and root tissues as a promising source for targeted withanolide biosynthesis. BMC Genomics 16(1):14.

Park D, Jung JW, Choi BS, Jayakodi M, Lee J, Lim J, Yu Y, Choi YS, Lee ML, Park Y, Choi IY, Yang TJ, Edwards OR, Nah G, Kwon HW (2015). Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. BMC Genomics 16(1):1.

2014

Perumal S, Jayakodi M, Izzah NK, Lee J, Choi HI, Shirasawa K, Choi BS, Liu S, Nou IS, Yang TJ (2014). Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in rapaand B. oleracea. PLoS ONE 9(4): e94499.

Izzah NK, Lee J, Jayakodi M, Sampath P, Mina J, Park BS, Ahn K, Yang TJ (2014). Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea var. capitata L.) and construction of an EST-based genetic map. BMC Genomics 15:149.

Jayakodi M, Perumal S, Lee SC, Choi BS, Senthil N, Liu Sand Yang TJ (2014). BrassicaTED – a public database for utilization of miniature transposable elements in Brassica species. BMC Research Notes 7:379.

Jayakodi M, Lee SC, Park HS, Jang WJ, Lee YS, Choi BS, Nah GJ,Kim DS, Senthil N, Sun C and TJ (2014). Transcriptome profiling and comparative analysis of Panax ginsengadventitious roots. Journal of Ginseng Research 38(4): 278-88.